SEEK ID: https://emsl-seek.pnnl.gov/people/25
Location: United States
ORCID: Not specified
Joined: 22nd Jan 2015
Expertise: Not specified
Tools: Not specified
Related items
Research in this project is designed to identify the key driving forces and environmental gradients that control material and energy fluxes through microbial communities and delineate their effects on community composition, structure, and function. We will also develop a mechanistic understanding of energy and carbon partitioning among community members under steady-state and during perturbations. Researchers will investigate the interplay between community spatial organization and function with ...
Public web page: http://www.pnnl.gov/biology/programs/fsfa/research.stm
This project is focused on the functional characteristics and interactions of microbes within communities that determine the dynamics of community composition, function, and spatial organization. It uses an iterative experimental-modeling approach to elucidate principles that drive community dynamics in response to altered environmental conditions and examine the relative contributions of interspecies interactions and dispersive processes to changes in community spatial and functional heterogeneity. ...
Public web page: http://www.pnnl.gov/biology/programs/fsfa/research.stm
This project is designed to identify the general principles governing the adaptive response of individual microbes to environmental perturbations within a community context. It seeks to establish the contribution of rapid, post-transcriptional regulatory processes in the overall adaptive response of communities to environmental stress and determine how responses of individual members contribute to community metabolic homeostasis.
Public web page: http://www.pnnl.gov/biology/programs/fsfa/research.stm
Oscar time course was carried out between 8/19/2013 (Day 7) to 9/9/2013 (Day 28). This is a nitrate only study. Oscar time course samples were received from Jesse Cole. Proteomics sample preparation were done by Marina Gritsenko.
The Excel file contains multiple spreadsheets. It contains a summary of spectral count from all time points and proteins identified in each time point. Each time point has three biological replicates (A B, C). Each biological sample is sum of two technical LC-MS runs ...
Creators: Eric Huang, Jennifer Mobberley, jessica cole
Submitter: Eric Huang
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
This is the first attempt to characterize proteins in the supernatant in Ana and Oscar. Oscar was harvested 10/08/2013 representing Day 14 (By Jesse Cole). Ana was harvested on 12/26/2013 representing Day 21. Supernatant was collected by passing though 0.2 um filter. Proteomics analysis was carried out using online trypsin digestion cart to increase sensitivity and reduce sample loss.
Peptide spectrum matches were identified using MSGF+. The database was Hot_Lake_v3_UCC_Oscr_20150513_2015-05-27.fasta ...
Creators: Eric Huang, Jennifer Mobberley, jessica cole
Submitter: Eric Huang
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Abstract (Expand)
Authors: S. R. Lindemann, J. M. Mobberley, J. K. Cole, L. M. Markillie, R. C. Taylor, E. Huang, W. B. Chrisler, H. S. Wiley, M. S. Lipton, W. C. Nelson, J. K. Fredrickson, M. F. Romine
Date Published: No date defined
Publication Type: Not specified
PubMed ID: 28659875
Citation: Front Microbiol. 2017 Jun 13;8:1020. doi: 10.3389/fmicb.2017.01020. eCollection 2017.