Microbial Community Dynamics
OverviewThis project is focused on the functional characteristics and interactions of microbes within communities that determine the dynamics of community composition, function, and spatial organization. It uses an iterative experimental-modeling approach to elucidate principles that drive community dynamics in response to altered environmental conditions and examine the relative contributions of interspecies interactions and dispersive processes to changes in community spatial and functional heterogeneity.
SEEK ID: https://emsl-seek.pnnl.gov/projects/3
Public web page: http://www.pnnl.gov/biology/programs/fsfa/research.stm
Organisms: Algoriphagus, Bacteroidetes, Halomonas, Idiomarina, Marinobacter, Oceanicaulis, Oceanicola, Phormidium, Porphyrobacter, Rhizobiales, Rhodobaca, Rhodobacteraceae
rc-support@pnnl.gov PALs: No PALs for this Project
Project created: 16th Dec 2014
Related items
Projects: Energy and Material Processing, Microbial Community Dynamics, Adaptive Responses
Institutions: Pacific Northwest National Laboratory
Projects: Energy and Material Processing, Microbial Community Dynamics, Adaptive Responses
Institutions: Pacific Northwest National Laboratory
Projects: Energy and Material Processing, Microbial Community Dynamics, Adaptive Responses
Institutions: Pacific Northwest National Laboratory
Projects: Energy and Material Processing, Microbial Community Dynamics, Adaptive Responses
Institutions: Pacific Northwest National Laboratory
This investigation is designed to understand the processes and mechanisms involved in the succession of microbial communities isolated fro Hot Lake. Succession is both a natural seasonal process as well as a response to disturbance. We want to understand the general principles that are involved in this process, specifically which species drive the succession process and what roles the individual species play both early and late in succession. The influence of nutrition and environmental factors ...
Collection of scanning electron microscope images of Ana and Oscar UCCs taken in May of 2012. Shows the cyanobacteria structure and multiple associated heterotrophs.
Creator: Alice Dohnalkova
Submitter: Steven Wiley
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Oscar time course was carried out between 8/19/2013 (Day 7) to 9/9/2013 (Day 28). This is a nitrate only study. Oscar time course samples were received from Jesse Cole. Proteomics sample preparation were done by Marina Gritsenko.
The Excel file contains multiple spreadsheets. It contains a summary of spectral count from all time points and proteins identified in each time point. Each time point has three biological replicates (A B, C). Each biological sample is sum of two technical LC-MS runs ...
Creators: Eric Huang, Jennifer Mobberley, jessica cole
Submitter: Eric Huang
This is the first attempt to characterize proteins in the supernatant in Ana and Oscar. Oscar was harvested 10/08/2013 representing Day 14 (By Jesse Cole). Ana was harvested on 12/26/2013 representing Day 21. Supernatant was collected by passing though 0.2 um filter. Proteomics analysis was carried out using online trypsin digestion cart to increase sensitivity and reduce sample loss.
Peptide spectrum matches were identified using MSGF+. The database was Hot_Lake_v3_UCC_Oscr_20150513_2015-05-27.fasta ...
Creators: Eric Huang, Jennifer Mobberley, jessica cole
Submitter: Eric Huang
Abstract (Expand)
Authors: J. J. Moran, L. M. Whitmore, N. G. Isern, M. F. Romine, K. M. Riha, W. P. Inskeep, H. W. Kreuzer
Date Published: 19th Mar 2016
Publication Type: Not specified
Abstract (Expand)
Authors: L. N. Anderson, P. K. Koech, A. E. Plymale, E. V. Landorf, A. Konopka, F. R. Collart, M. S. Lipton, M. F. Romine, A. T. Wright
Date Published: 22nd Dec 2015
Publication Type: Not specified
Abstract (Expand)
Authors: Hans Bernstein, M. A. Charania, R. S. McClure, N. C. Sadler, M. R. Melnicki, E. A. Hill, L. M. Markillie, C. D. Nicora, A. T. Wright, M. F. Romine, A. S. Beliaev
Date Published: 4th Nov 2015
Publication Type: Not specified
Abstract (Expand)
Authors: W. C. Nelson, Y. Maezato, Y. W. Wu, M. F. Romine, S. R. Lindemann
Date Published: 23rd Oct 2015
Publication Type: Not specified
Abstract (Expand)
Authors: J. P. Beam, Z. J. Jay, M. C. Schmid, D. B. Rusch, M. F. Romine, M. Jennings Rde, M. A. Kozubal, S. G. Tringe, M. Wagner, W. P. Inskeep
Date Published: 3rd Jul 2015
Publication Type: Not specified
The META Center for Systems Biology will host its second annual symposium in Eugene, Oregon on July 31-August 2, 2015. The Symposium on Host-Microbe Systems Biology will focus on the theme of “Synthesis and Selection of Host-Microbe Systems”. We will explore the properties of host-microbe systems from efforts to build these systems de novo, using approaches of synthetic biology, and to subject these systems to selective pressures, using approaches of experimental evolution. More details about the ...
Start Date: 31st Jul 2015
End Date: 2nd Aug 2015
Event Website: http://meta.uoregon.edu/symposium-2015/
Country: 
United States
City: Eugene, Oregon
